Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VCP

Cell type

Cell type Class
Kidney
Cell type
FU-UR-1
NA
NA

Attributes by original data submitter

Sample

source_name
human ASPS cell line
chip antibody
VCP (catalog# ab111740)
cell line
FU-UR-1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and TARGET DNA complexes were isolated with antibody. Library was prepared using NEBnext ChIP-seq libraray prep reagent set

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
52369129
Reads aligned (%)
97.2
Duplicates removed (%)
23.3
Number of peaks
22445 (qval < 1E-05)

hg19

Number of total reads
52369129
Reads aligned (%)
96.6
Duplicates removed (%)
23.6
Number of peaks
21968 (qval < 1E-05)

Base call quality data from DBCLS SRA